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Instructions to Authors

Optional Open Access Policy for JBSD

When an article is published under "Open Access," it , in full text, full image, and searchable form, becomes universally available in digital form, free of charge to anyone in the world. The authors, the publisher, and the right holders grant the right to use, reproduce, and disseminate the work in digital form to all users.

The availability of full text articles in fully searchable form under open access enables the various internet search engines and crawlers to go through the article and index the results. This may increase the probability of other researchers becoming aware of the work.

Open access treats the cost of publication as part of the research project, and it is estimated that the current cost is US $1,500 per article.

The authors of articles in JBSD may elect to have their articles published under "Open Access," provided the cost of publication (US $1,500) is paid in advance. This policy applies to articles already published or for future submissions. If Open Access Option is not exercised, the articles will be published in the traditional manner, in print and online versions.

When an article is published in JBSD under Open Access, the following will happen:

    At the JBSD web site (http://www.jbsdonline.com), a full text/full image, html version with a search engine will appear, and this will be accessible to anyone without any logins or payments.

    Without logging in or paying a fee, a visitor can download the full text/full image PDF version of the article as it appeared in the print version.

    Open Access articles will be identified by a special insignia in the Table of Contents at the JBSD web site.

    Any supplementary material associated with an article will be available, free of charge, at the JBSD web site.

    Adenine Press will not hold the copy rights for the digital version of "Open Access" JBSD articles that appear at the journal web site.

Examples of Open Access Articles in Adenine Journals can be found at the following links:

http://www.tcrt.org/index.cfm?d=3015&c=4125&p=11938&do=detail

http://www.tcrt.org/index.cfm?d=3015&c=4102&p=11434&do=detail

http://www.tcrt.org/index.cfm?d=3018&c=4150&p=12289&do=detail

http://www.tcrt.org/index.cfm?d=3018&c=4153&p=12353&do=detail

http://www.tcrt.org/index.cfm?d=3018&c=4130&p=12032&do=detail

http://www.tcrt.org/index.cfm?d=3015&c=4125&p=11945&do=detail

For further information please email steve@adeninepress.com, phone: 518-456-0784; fax: 518-452-4955

Download Open Access Authorization & Payment Form

Subjects Covered

The Journal of Biomolecular Structure and Dynamics cordially welcomes manuscripts from active investigators in biological structure, dynamics, interactions and expression. The Journal will cover both experimental and theoretical investigations in the area of nucleic acids, nucleotides, proteins, peptides, membranes, polysaccharides and all their components, metal complexes and model systems. The Journal publishes original articles, communications a la express and timely reviews. If an author wishes to write a review, please obtain clearance from any one of the editors.

A single PDF file of the complete manuscript (including text, tables and figures) can be emailed as an attachment to any one of the members of the Board of Editors, listed below, or directly to the Editor-in-Chief. This Journal uses PDF files to complete the review process. The PDF must be a light file and should be free of special fonts not usually available in many laboratories. To make the PDF file a light one, in the "Job Option" setup of the Adobe Acrobat Distiller select compression at "72 dpi" for color images, "300 dpi" for line art and gray scale. In the fonts menu of Distiller, select "embed all fonts". For symbols and greeks, use only the generic "symbol" font. For special characters, one could also employ the key board along with the alt ("option") key. If you are unable to make a PDF file, you can supply the complete manuscript as an MSWORD.DOC file. In creating the MSWORD.DOC file, if you experience problems in inserting your figures, supply the figures separately as .jpg, .tif or.eps formats. If the manuscript is submitted with separate files for figures, send the manuscript and figures only to the Editor-in-Chief.

The authors must also supply the editor, the names, postal address, and emails of five possible referees for the paper.

Thomas E. Cheatham, III
Department of Medicinal Chemistry
University of Utah
2000 East, 30 South,
Salt Lake City, UT 84117-5820
Phone 801 587 9652 Fax 801 585 5366
Email: tec3@utah.edu

M. D. Frank-Kamenetskii
Center for Advanced Biotechnology
Boston University
36 Cummington Street
Boston MA 02215 USA
Phone: 617-353-8498; Fax: 617-353-8501
Email: mfk@bu.edu

Valery Ivanov
Institute of Molecular Biology
Russian Academy of Sciences Vavilov 32
117984 Moscow, Russia
Phone: 7-095-135-1235
Fax: 7-095-135-1405
Email: valerychrom@yahoo.com

Luis A. Marky
Department of Pharmaceutical Sciences
College of Pharmacy
University of Nebraska Medical Center
986025 Nebraska Medical Center
Omaha, NE 68198-6025
Phone: (402) 559-4628; Fax: (402) 559-9643
Email: lmarky@unmc.edu

Dino Moras
IGBMC Parc d'Innovation
1 rue L. Fries BP 163
67404 Illkirch, France
Phone: 33-88-653351
Fax: 33-88-653203
Email: moras@igbmc.u-strasbg.fr

Irina M. Russu
Molecular Biology and Biochemistry
Wesleyan University
Middletown CT 06459-0175 USA
Phone: 860-685-2428
Fax: 860-685-2141
Email: irussu@wesleyan.edu

Wolfram Saenger
Institut fur Kristallographie
Freie Universitat Berlin
Takustr 6
D-14195 Berlin, Germany
Phone: 49-30-8383412; Fax: 49-308386702
Email: saenger@chemie.fu-berlin.DE

Ramaswamy H. Sarma
Institute of Biomolecular Stereodynamics
Department of Chemistry
The University at Albany
Albany NY 12222 USA
Phone: 518-456-9362; Fax: 518-452-4955
Email: rhs07@albany.edu

Zippora Shakked
Department of Structural Biology
Weizmann Institute of Science
Rehovot 76100 Israel
Phone: 972-8-482672
Fax:972-8-344154
Email: zippi.shakked@weizmann.ac.il

S. Sowdhamini
National Center for Biological Sciences
GKVK Campus, Ballary Road
Bangalore 560065 India
Phone: +91-80-23666002
Fax: +91-80-23636662
Email: mini@ncbs.res.in

J. Sponer
Institute of Biophysics
Academy of Sciences of the Czech Republic
Kralovopolska 135,
612 65 Brno, Czech R.
Phone: 420-5-4151-7133
Fax: 420-5-4151-7133
Email: sponer@ncbr.chemi.muni.cz

Tracy Whitehead
Monsanto, 800 N. Lindbergh Blvd.
Bldg. V, Mail Zone V2C
St. Louis, MO 63167
Phone: (314) 694-8109
Fax: (314) 694-8774
Email: tracy.l.whitehead@monsantocom

Sybren S. Wijmenga
Physical Chemistry - Biophysical Chemistry
Radboud University Nijmegen
Toernooiveld 1
6525 ED Nijmegen, The Netherlands
Phone: 31-24-3652678; Fax: 31-24-3652112
Email: S.Wijmenga@nmr.ru.nl

Krystyna Zakrzewska
Institut de Biologie et Chimie des Proteines
7, passage du Vercors
69 367 Lyon cedex 07 France
Phone: +33 4 37 65 29 44
Fax: +33 4 72 72 26 04
Email: krystyna.zakrzewska@ibcp.fr

Editorial Offices Where the Manuscripts
Can Be Submitted

If a manuscript originates from a particular country, it does not necessarily mean that the manuscript should be submitted to the Editor in that country. Authors have the freedom to submit to any one of the editors. If the manuscript is submitted to an Editor other than the Editor-in-Chief, please forward a copy of the covering letter to the Editor-in-Chief at the time of submission. If the manuscript is submitted with separate files for figures, send the manuscript and figures only to the Editor-in-Chief.

The Editors reserve the right to redirect the manuscripts to other members of the Board of Editors or send to the Editor-in-Chief to assign an appropriate Editor.

Review by Referees

All articles will be subject to review by expert referees to ascertain scientific soundness. Authors should suggest a slate of five possible referees. The editors may or may not employ the recommended referees. Please include their complete mailing address, phone, fax and e-mail details of the suggested referees.

Revised Versions

Email the manuscript as an attachment to rhs07@albany.edu. Supply the complete manuscript as an MSWORD.DOC file. In creating the MSWORD.DOC file, if you experience problems in inserting your figures, supply the figures separately as .jpg, .tif or.eps formats. In addition to the MSWORD.DOC file, also email a PDF of the revised manuscript.

Category of Articles

Regular Articles: No page limitations. Normal time for publication of papers which do not undergo extensive revisions is between 3 to 5 months.

Express Communications: Timely discoveries need to be communicated at an accelerated pace, that is, within 2 to 3 months. Authors wishing to have their manuscripts published express should indicate so in the covering letter along with the arguments for immediate communication. Express articles normally should not exceed 12 pages including tables and figures. Editors and referees may disagree with the author's request for express handling, and in this case the article will be processed for normal publication.

Hypotheses: Publication as immediately as possible. Not to exceed four printed pages, papers in this section must propose interesting models and ideas satisfying the following criteria:

  • New explanations, hypotheses of certain phenomenon, either recently observed facts not accounted for or well known facts whose "text book" explanations contradict new findings.
  • The new hypothesis cannot be easily proven at present.
  • There are specific ways to test the new hypothesis in the future, and short descriptions of these ways have to be presented.

Opinions: Publication as immediately as possible. Not to exceed 4 journal pages, papers in this section present new vision/perspective of recent developments; they may also critically address recent publications in any journal. In the latter case the criticized authors will be given a chance to write a prompt response. Articles in this section should primarily address unsolved controversies arising in current research.

Fonts and Special Characters

For text, tables and figure legends, please use the font "Times;" for Greek letters and symbols, use the "Symbol" font or use appropriate key board equivalents under "Times."

Manuscript Organization

The manuscript may be arranged in the following manner: Materials and Methods, Results and Discussion, Acknowledgments, References and Footnotes. The Materials and Method section should give sufficient details so that the experiments can be repeated. The subheading "Results and Discussion" in many instances can be replaced by a set of appropriate subheadings which reflect the contents. In the Abstract section, if there is a reference, please provide the complete reference (rather than the number in the reference section). This is because Chemical Abstracts and Biological Abstracts use the abstracts from the Journal directly.

The legends for figures and tables should appear under the appropriate figure and on top of the tables, respectively. Figure and Table numbers must be marked clearly. Figures are numbered using the Arabic system (i.e. 1, 2, 3 ...) and tables are numbered in the Roman manner (i.e. I, II, III ...).

Title Page

Do not use all CAPITAL LETTERS for any entry in the title page; use both lower and upper cases. The title page must contain:

  1. Title in upper and lower case
  2. Authors and their affiliation. In the case of authors who originate from different institutions, please include a complete mailing address for each institution.
  3. The author to whom correspondence should be addressed must be indicated by an asterisk along with his/her phone, fax and email data. This will appear as a footnote to page 1 of the article.

References and Footnotes

References and footnotes are numbered sequentially and the numbers appear in parenthesis in the text. Note that except for page 1, there are no footnotes at the end of pages, and hence references and footnotes must be lumped together sequentially. Books and journals are treated equally, their names and volume numbers appear in regular italic. Some examples of the arrangement of references and footnotes (1, 2) are given below:

  1. R. H. Sarma, M. H. Sarma, R. Rein, M. Shibata, R. S. Setlik, R. L. Ornstein, A. Latif Kazim, A. Cairo and T. B. Tomasi, FEBS Letters 357, 317-323 (1995)
  2. The nomenclature employed in this article is that approved by IUPAC/IUB.

Equations

Mathematical equations should be clearly created and numbered in the text. The number should appear in square brackets, i.e., [ ], to distinguish them from reference numbers. They must be clearly visible in black in the hardcopy. Equations can be created using Words equation editor.

Nomenclature

The Journal follows IUPAC-IUB nomenclature.

No Page Charges

There are no page charges. Once a manuscript has been accepted by an Editor as scientifically sound, the Journal of Biomolecular Structure and Dynamics will publish the article at its expense. However, there may be charges for certain special services. For example, a laboratory which has grant support must pay the cost of color illustrations. For laboratories without grant support, the Journal will pay for these services provided they are essential for the article. In the case of labortories with limited grant resources, we expect some miminal payment, approximately 20-25% of the color production charge. Please note that color production is very expensive; for example, for one page of color (8.5” x 11”) which can usually accommodate about 2-4 color plates, the actual cost is roughly $1,000-1,500.

Page Proofs

The authors will be furnished with PDF files. It is the author's responsibility that the proofs are corrected and returned immediately. If the proofs are not received on time Adenine will proof read and go ahead with the production. Author's reasonable number of corrections will be incorporated at no charge. All other alterations and corrections will be charged to the author. Authors of articles accepted for publication in the Journal must sign a standard copyright transfer form. Authors are completely responsible for obtaining the permission to reproduce materials such as figures, copyrighted text etc by a publisher/agency other than Adenine.

Responsibility of the Board

Board of Editors, Editorial Advisory Board and the Publisher Adenine Press will have discharged responsibility once an article is published. They are not responsible for any or part of statements and claims made by authors in their articles.

It is understood that the communicating author, collectively represents all authors of an article, and that he/she has obtained permission form all authors to communicate the article in their behalf. Adenine Press, the Journal of Biomolecular Structure and Dynamics or its Board is not responsible, for any negligence or omissions by the communicating author.



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