Issue October 2006

category image Volume 24
No. 2 (p 91-202)
October 2006
ISSN 0739-110

Theoretical Model of the Three-dimensional Structure of a Disease Resistance Gene Homolog Encoding Resistance Protein in Vigna mungo (p. 123-130)

Plant disease resistance (R) genes, the key players of innate immunity system in plants encode ?R? proteins. ?R? protein recognizes product of avirulance gene from the pathogen and activate downstream signaling responses leading to disease resistance. No three dimensional (3D) structural information of any ?R? proteins is available as yet. We have reported a ?R? gene homolog, the ?VMYR1?, encoding ?R? protein in Vigna mungo. Here, we describe the homology modeling of the ?VMYR1? protein. The model was created by using the 3D structure of an ATP-binding cassette transporter protein from Vibrio cholerae as a template. The strategy for homology modeling was based on the high structural conservation in the superfamily of P-loop containing nucleoside triphosphate hydrolase in which target and template proteins belong. This is the first report of theoretical model structure of any ?R? proteins.

Key words: Vigna mungo; Resistance genes; ?R? protein; ABC transporter; Homodimer; and Homology modeling.

Jolly Basak1,a,*
Ranjit P. Bahadur2,b,*

1Plant Molecular and Cellular Genetics Section
Bose Institute
P-1/12, CIT Scheme VII M
Kolkata 700054. India.
2Department of Biochemistry
Bose Institute
P-1/12, CIT Scheme VII M
Kolkata 700054. India

aPresent address:
Ecologie Systématique Evolution
UMR 8079, Bât. 360 & 362
Université de Paris-Sud
91405 Orsay cedex, France.
bPresent address:
Institut de Biochimie et de Biophysique Moleculaire et Cellulaire
UMR 8619, Bât. 430
Université de Paris-Sud
91405 Orsay Cedex, France
*ranjit.bahadur@ibbmc.u-psud.fr jolly.basak@ese.u-psud.fr

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