Issue August 2006No. 1 (p 1-90) August 2006 ISSN 0739-110 Thermodynamics of Interactions of TAlPyP4 and AgTAlPyP4 Porphyrins with Poly(rA)poly(rU) and Poly(rI)poly(rC) Duplexes (p. 67-74)We employed UV light absorption and circular dichroism (CD) spectroscopic measurements to study the binding of novel water-soluble porphyrins meso-tetra-(4N-allylpyridyl)porphyrin [TAlPyP4], and its Ag containing derivative to the poly(rA)poly(rU) and poly(rI)poly(rC) RNA duplexes. Our results suggest that TAlPyP4 associate with the duplexes via intercalation, whereas the conservative CD spectra indicates that AgTAlPyP4 preferably binds via outside self-stacking mode. We used our determined binding isotherms for each ligand-RNA binding event to calculate the binding constant, Kb, and binding free energy, ΔGb = -RTlnKb. By performing these experiments as a function of temperature, we evaluated the van?t Hoff binding enthalpies, ΔH. The binding entropies, ΔSb, were calculated as ΔSb = (ΔHb - ΔGb)/T. We interpret our data in terms of specific interactions that stabilize/destabilize each ligand-RNA complex studied in this work. Taken together, our data provide important new information about the thermodynamics of interactions of porphyrins with nucleic acids.
A. A. Ghazaryan1 1Department of Molecular Physics Subscription is more cost effective than purchasing PDFs on-the-fly. Click here for details. |