Issue August 2006

category image Volume 24
No. 1 (p 1-90)
August 2006
ISSN 0739-110

Thermodynamics of Interactions of TAlPyP4 and AgTAlPyP4 Porphyrins with Poly(rA)poly(rU) and Poly(rI)poly(rC) Duplexes (p. 67-74)

We employed UV light absorption and circular dichroism (CD) spectroscopic measurements to study the binding of novel water-soluble porphyrins meso-tetra-(4N-allylpyridyl)porphyrin [TAlPyP4], and its Ag containing derivative to the poly(rA)poly(rU) and poly(rI)poly(rC) RNA duplexes. Our results suggest that TAlPyP4 associate with the duplexes via intercalation, whereas the conservative CD spectra indicates that AgTAlPyP4 preferably binds via outside self-stacking mode. We used our determined binding isotherms for each ligand-RNA binding event to calculate the binding constant, Kb, and binding free energy, ΔGb = -RTlnKb. By performing these experiments as a function of temperature, we evaluated the van?t Hoff binding enthalpies, ΔH. The binding entropies, ΔSb, were calculated as ΔSb = (ΔHb - ΔGb)/T. We interpret our data in terms of specific interactions that stabilize/destabilize each ligand-RNA complex studied in this work. Taken together, our data provide important new information about the thermodynamics of interactions of porphyrins with nucleic acids.

A. A. Ghazaryan1
Y. B. Dalyan1,*
S. G. Haroutiunian1
V. I. Vardanyan1
R. K. Ghazaryan2
T. V. Chalikian3

1Department of Molecular Physics
Faculty of Physics
Yerevan State University
1 Alex Manoogian Street
Yerevan 375025, Armenia
2Department of Pharmaceutical Chemistry
Yerevan State Medical University
2 Korjun Street
Yerevan 375025, Armenia
3Department of Pharmaceutical Sciences
Leslie Dan Faculty of Pharmacy
University of Toronto
19 Russell Street
Toronto, Ontario M5S 2S2, Canada
*yeva@ysu.am

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