Issue October 2005

category image Volume 23
No. 2 (p 113-232)
October 2005
ISSN 0739-110

Is the Fab-Fragment from Monoclonal Rheumatoid IgM Flexible? A Spin Label Dynamics Study. (p. 175-182)

A comparative study of the Fab- and Fab-RF-fragments in the molecules of monoclonal IgM and IgM-RF, respectively, was performed by the spin label method. The spin label, 2,2,6,6-tetramethyl-4-dichloro-triazinylaminopiperidine-1-oxyl, was introduced into the peptide part of the protein. On the basis of the data on the temperature-viscosity dependences of the EPR spectral parameters of the resultant spin-labeled proteins, the rotational correlation time τ of the spin carrier was determined. It turned out that the reduced to normal conditions τ values for the molecules of the Fab- and Fab-RF-fragments were 21±2 and 11±1 ns, respectively. Analysis of the resultant data provides sufficient grounds for assuming that such a sharp decrease in the τ value for the molecule of the Fab-RF fragment is due to local flexibility of its globular structure, which, in turn, can determine the specific features of the IgM-RF functioning as an autoantibody.

V. P. Timofeev1,*
Ya. V. Tkachev1
V. V. Novikov1
V. A. Alyoshkin2
V. A. Lapuk3

1V.A.Engelhardt Institute of Molecular Biology
Russian Academy of Sciences
ul. Vavilova 32,
119991 Moscow, Russia
2State Institution
?Moscow Gabrichevsky Research Institute of Epidemiology and Microbiology?
Public Health Ministry of Russia
ul. Admirala Makarova 10
125212 Moscow, Russia
3N.D.Zelinsky Institute of Organic Chemistry
Russian Academy of Sciences
Leninsky prosp. 47
119991 Moscow, Russia
*tim@eimb.relarn.ru

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