Issue April 2005

category image Volume 22
No. 5 (p 493-614)
April 2005
ISSN 0739-110

Residues Distal from the Active Site that Alter Enzyme Function in M.HhaI DNA Cytosine Methyltransferase (p. 533-544)

Ten M.HhaI residues were replaced with alanine to probe the importance of distal protein elements to substrate/cofactor binding, methyl transfer, and product release. The substitutions, ranging from 6-20 Å from the active site were evaluated by thermodynamic analysis, pre-steady and steady-state kinetics, to obtain KdAdoMet, KdDNA, kcat/KmDNA, kcat, and kmethyltransfer values. For the wild-type M.HhaI, product release steps dominate catalytic turnover while the 4-fold faster internal microscopic constant kmethyltransfer presents an upper limit. The methyl transfer reaction has ΔH and ΔS values of 10.3 kcal/mol and -29.4 cal/(mol K), respectively, consistent with a compressed transition state similar to that observed in the gas phase. Although the ten mutants remained largely unperturbed in methyl transfer, long-range effects influencing substrate/cofactor binding and product release were observed. Positive enhancements were seen in Asp73Ala, which showed a 25-fold improvement in AdoMet affinity and in Val282Ala, which showed a 4-fold improvement in catalytic turnover. Based on an analysis of the positional probability within the C5-cytosine DNA methyltransferase family we propose that certain conserved distal residues may be important in mediating long-range effects.

Vyas Sharma
Ben Youngblood
Norbert Reich*

Department of Chemistry and Biochemistry
University of California
Santa Barbara, CA 93106, USA
*reich@chem.ucsb.edu

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