Issue February 2005

category image Volume 22
No. 4 (p 381-492)
February 2005
ISSN 0739-110

Complex-Formation of Ethidium Bromide with Poly[d(A-T)]·Poly[d(A-T)] (p. 465-470)

The interaction of Ethidium Bromide (EtBr) with double-stranded (ds-) and single-stranded (ss-) poly[d(A-T)] was studied in different ionic strengths solutions. Optical spectroscopy and Scatchard analysis results indicate that the ligand interacts to both helix and coiled structures of the polynucleotide by ?strong? and ?weak? binding modes. The association parameters (binding constant ? K ? and the number of nucleotides corresponding to a binding site ? n) of the strong type of interaction were found to be independent of Na+ concentration. Weak interaction occurs at low ionic strength and/or high EtBr concentration. Estimated binding parameters of EtBr with ss- and ds-polynucleotide are in good agreement with those for EtBr-B-DNA complexes. Data obtained provided an evidence for a stacking interaction of EtBr with single stranded poly[d(A-T)].

Key words: Ethidium bromide, Double-stranded (ds-) and single-stranded (ss-) poly[d(A-T)], Stacking interaction, Strong and weak binding.

Poghos O. Vardevanyan1
Ara P. Antonyan1
Marine A. Parsadanyan1
Hayk G. Davtyan1
Zaruhi R. Boyajyan2
Armen T. Karapetian2*

1Department of Biophysics
Yerevan State University
Yerevan, 375025, Armenia
2Physics Department
Yerevan State University of Architecture and Construction
Yerevan, 375009, Armenia
*karam@edu.am

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