Issue April 2004

category image Volume 21
No. 5 (p. 615-724)
April 2004
ISSN 0739-110

Structural Features in the Model of a Thermostable and Stress-resistant Protein, SP1 from aspen (p. 651-656)

A three dimensional theoretical model of SP1 (stable protein 1), which is resistant to high temperature and biotic-stresses, is presented here. The model was generated by the application of homology modeling technique. The conformational rigidity imparted to the fold by the presence of hydrogen-bonded, C5, C7, C10 and C13 structures in the loop regions, multiple aromatic ? aromatic interactions at the protein interior and on the surface, in addition to salt-links and hydrogen-bonds are primarily the major factors, responsible for the increased stability of protein. The putative protein family is characterized by motifs, E-x(0,1)-L-x-[AEGQS] and V-x(2,3)-L-x-[ADEGST] and the active site in the tertiary structure is formed by conserved aromatic and isoleucine clusters.

Key words: Thermostability, Thermophilic, SP1, Aromatic clusters, Homology modeling.

Ravindranath S. Rathore1*
T. Narasimhamurthy2

1Department of Physics
Indian Institute of Science
Bangalore 560 012, India
2Bioinformatics Centre
Indian Institute of Science
Bangalore 560 012, India
*newdrugdesign@yahoo.com

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