Issue April 2003

category image Volume 20
No. 5 (p 615-732)
April 2003
ISSN 0739-1102

K+ and Na+ -Induced Self-Assembly of Telomeric Oligonucleotide d(TTAGGG)n (p. 693-702)

The telomeric DNA oligomers, d(TTAGGG)n, where n=1, 2, 4, could self-associate into the multi-stranded structures in appropriate condition and exhibited a different CD spectra. The present of Na+ was more advantage to facilitate the formation of anti-parallel conformation, but the present of K+ enhanced their thermal stability. Spectroscopic analysis of 3, 3´-diethyloxadicarbocyanine (DODC) showed the formation of hairpin quadruplex structures for d(TTAGGG)2 and d(TTAGGG)4, but d(TTAGGG) could not. The four-stranded tetraplexes and branched nanowire formed in the present of K+ or Na+ alone were observed by atomic force microscopy (AFM). The ability to self-assemble of d(TTAGGG)n, into four-stranded tetraplexes and nanowires depends strongly on the number of repeating units and ionic environment. A model to explain how these structures formed is proposed.

Key words: telomeric DNA, nanowire structure; quadruplex, monovalent cations, circular dichroism, atomic force microscopy.

Xiao-Yan Zhang1
En-Hua Cao1,*
Yan Zhang1
Chunqing Zhou2
Chunli Bai2

1Centre for Molecular Biology
Institute of Biophysics
Chinese Academy of Sciences
15 Datun Road, Chaoyang District
Beijing 100101, P. R. China
2Center for Molecular Sciences
Institute of Chemistry
Chinese Academy of Sciences
Beijing 100080, China
*caoeh@sun5.ibp.ac.cn

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