Issue June 2002

category image Volume 19
No. 6 (p 947-1136)
June 2002
ISSN 0739-1102

Short-Range Interactions and Size of Ligands Bound to DNA Strongly Influence Adsorptive Phase Transition Caused by Long-Range Interactions (p. 1093-1100)

Long-range interaction between all the ligands bound to DNA molecule may give rise to adsorption with the character of phase transition of the first kind (D. Y. Lando, V. B. Teif, J. Biomol. Struct & Dynam. 18, 903-911 (2000)). In this case, the binding curve, c(co), is characterized by a sudden change of the relative concentration of bound ligands (c) at a critical concentration of free (unbound) ligands, co=cocr, from a low c value to a high one where co is molar concentration of free ligands. Such a transition might be caused by some types of DNA condensation or changes in DNA topology. For the study of the conditions necessary for adsorption with the character of phase transition, a calculation procedure based on the method of the free energy minimum is developed. The ligand size and two types of interactions between ligands adsorbed on DNA molecule are taken into consideration: long-range interaction between all the ligands bound to DNA and contact interactions between neighboring ligands. It was found that a) Stronger long-range interaction is required for longer ligands to induce phase transition that is occurred at greater cocr values; b) Pure contact interaction between neighboring ligands can not itself initiate phase transition. However contact cooperativity strongly decreases the threshold value of energy of long-range interaction necessary to give rise to the transition.

Vladimir B. Teif1, 2
Samvel G. Haroutiunian3
Vladimir I. Vorob?ev4
Dmitri Y. Lando1*

1Institute of Bioorganic Chemistry
Belarus National Academy of Sciences
Kuprevich St. 5/2
220141 Minsk, Belarus
2Institute of Molecular and Atomic Physics
Belarus National Academy of Sciences
F. Skorina Ave. 70
220072 Minsk, Belarus
3Chair of Molecular Physics
Department of Physics
Yerevan State University
375049 Yerevan, Armenia
4Institute of Cytology
Russian Academy of Sciences
Tikhoretsky prosp. 4
St. Petersburg 194064
Russia
*Lando@iboch.bas-net.by

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