Issue December 2001

category image Volume 19
No. 3 (p 365-570)
December 2001
ISSN 0739-1102

Thermodynamics of the Melting of PNA2/DNA Triple Helices (p. 535-542)

Equilibrium melting curves were obtained for triplexes, formed by single stranded DNA containing an A10 target with bis-PNA consisting of two T10 decamers. Thermodynamic parameters of melting were determined for Na+ concentrations 50, 200 and 600mM by two methods. The melting enthalpy ΔH° was evaluated from the width of the differential melting curves and from the concentration dependence of the melting temperature. The latter method allowed also evaluating the melting entropy ΔS&deg. The following results were obtained: ΔH&deg = -137 kcal/M, ΔS&deg = -368 cal/M·K, ΔG&deg298= -27 kcal/M. No dependence of ΔH&deg, ΔS&deg and ΔG&deg298 was observed upon ionic strength within the accuracy of the experiment (±10%). The absolute values of ΔH&deg, ΔS&deg and ΔG&deg298 are 2 to 3 times higher than the published values of corresponding melting parameters for decameric PNA/DNA duplexes of various nucleic base sequences. The origin of the extremely high stability of the triplexes is discussed.

Olga V. Krupnik1
Yurii A. Guscho1
Kseniya A. Sluchanko1
Peter E. Nielsen2
Yurii S. Lazurkin1*

1Inst. of Molecular Genetics
Russian Academy of Sciences
Kurchatov sq. 2
Moscow 123182, Russia
2Institute of Medical
Biochemistry & Genetics
The Panum Institute
Blegdamsvej 3c
DK-2200 Copenhagen Denmark
*lazurkin@img.ras.ru

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