Issue February 2001

category image Volume 18
No. 4 (p 493-646)
February 2001
ISSN 0739-1102

Conformational Preferences of Heterochiral Peptides. Crystal Structures of Heterochiral Peptides Boc-(D) Val-(D) Ala-Leu-Ala-OMe and Boc-Val-Ala-Leu-(D) Ala-OMe- Enhanced Stability of β-sheet Through C-H...O Hydrogen Bonds (p. 579-594)

The crystal structures of Boc-(D) Val-(D) Ala-Leu-Ala-OMe (vaLA) and Boc-Val-Ala-Leu-(D) Ala-OMe (VALa) have been determined. vaLA crystallises in space group P212121 with a = 9.401 (4), b = 17.253 (5), c = 36.276 (9)Å, V = 5884 (3) Å3, Z = 8, R = 0.086. VALa crystallises in space group P21 with a = 9.683 (9), b = 17.355 (7), c = 18.187 (9) Å, β = 95.84 (8)°, V = 3040(4) Å3, Z = 4, R = 0.125. There are two molecules in the asymmetric unit in antiparallel β-sheet arrangement in both the structures. Several of the Cα hydrogens are in hydrogen bonding contact with the carbonyl oxygen in the adjacent strand.

An analysis of the observed conformational feature of D-chiral amino acid residues in oligopeptides, using coordinates of 123 crystal structures selected from the 1998 release of CSD has been carried out. This shows that all the residues except D-isoleucine prefer both extended and αL conformation though the frequence of occurence may not be equal. In addition to this, D-leucine, valine, proline and phenylalanine have assumed αR conformations in solid state. D-leucine has a strong preference for helical conformation in linear peptides whereas they prefer an extended conformation in cyclic peptides.

G. Felcy Fabiola1
Vivek Bobde2
L. Damodharan1
Vasantha Pattabhi1*
S. Durani2

1Departrment of Crystallography and Biophysics
University of Madras
Chennai, 600 025, India
2Department of Chemistry and Biotechnology
Indian Institute of Technology
Mumbai, 400 076, India
*pvasantha@hotmail.com

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