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Book of Abstracts: Albany 2007

category image Albany 2007
Conversation 15
June 19-23 2007
Showing 101 to 200 of 235 items.  Page: 2

Finding AT-DNA ? Kinetic Recognition of Long Adenine-Thymine Stretches by Metal-Ligand Complexes

Pär Nordell, Fredrik Westerlund, L. Marcus Wilhelmsson, Bengt Nordén, Per Lincoln

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Formation of Pseudo-ring Structures in DNA Bound with cis-platinum

Samvel G. Haroutiunyan, Dmitrii Yu. Lando, Tigran S. Haroutiunyan, Ara P. Antonyan, Shushanik A. Sargsyan, Poghos O.Vardevanyan

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Growth of Saccharomyces cerevisiae on Ethanol Induces the Synthesis of PolyPV Fraction

Vladimir M. Vagabov, Ludmila V. Trilisenko, Igor S. Kulaev

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Influence of Na+ and Mg2+ Ions on Thermal Stability of Oligonucleotide Duplexes

Alexander A. Lomzov, Dmitrii V. Pyshnyi

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Isolation of Proteins Involved in Recognition of Oxidatively Damaged DNA from the Yeast Saccaromyces cerevisiae

Long Xu and Thomas D. Tullius

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New Water-Soluble Cationic Metalloporphyrins as Potential Anticancer Agents

Artak Tovmasyan, Robert Ghazaryan, Lida Sahakyan, Gennadi Gasparyan, Nelly Babayan, Grigor Gyulkhandanyan

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Platinum Anticancer Drug Damage Alters the Rotational Setting of Positioned Nucleosomes

Matthias Ober, Stephen J. Lippard

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Protective Action of Theophylline on Cisplatin and Mitomycin C Induced Apoptosis in Human Peripheral Blood Lymphocytes

S. Usha, I. Maria Johnson, R. Malathi

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Quantifying Force-dependent and Zero Force DNA Intercalation by Single Molecule Stretching

Mark C. Williams, Ioana D. Vladescu, Thayaparan Paramanathan, Fredrik Westerlund, Micah J. McCauley, Per Lincoln, Megan E. Nuñez, Ioulia Rouzina

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Structures and Mechanisms of DNA Damage Mediated by Transition Metals

Cynthia J. Burrows, James G. Muller, Yu Ye, Xiaoyun Xu, Aaron Fleming

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Thermodynamic Stability of a DNA Duplex Containing a Spiroiminodihydantoin Lesion

Fadzai Chinyengetere and , Elizabeth R. Jamieson

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Use of Both Novel and Classical Approaches to Evaluate the 1 vs. 2 Metal Ion Nuclease Mechanisms

Cynthia Dupureur, Fuqian, Xie, Shabir Qureshi, Grigorios Papadakos

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Bacterial detection using PNA technology

Irina V. Smolina, Kevin Luk, Charles LeeNancy S. Millerand Maxim D. Frank-Kamenetskii

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Metal-Containing Peptide Nucleic Acids

Catalina Achim

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Molecular Modelling Studies of Peptide Nucleic Acids

Smriti Sharma, Uddhavesh B Sonavane, Rajendra R Joshi

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Aptabodies: RNA Aptamer-derived Constructs that Mimic Antibodies in Immunochemical Assays

Hua Shi

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Chaperone-Assisted RNA Crystallography: Selection and Co-crystallization of a Fab-ΔC209 P4-P6 complex

Jing-Dong Ye , Valentina Tereshko , John K. Frederiksen , Akiko Koide , Frederic A. Fellouse , Sachdev S. Sidhu, Shohei Koide, Anthony A. Kossiakoff, Joseph A. Piccirilli

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Characterization of short RNA clones in the Sfmbt2 locus

Grace X.Y. Zheng, Joel R. Neilson , Christopher B. Burge and , Phillip A. Sharp

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Design of Ribonucleopeptide-based Receptors and Fluorescent Sensors

Takashi Morii

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Interaction of non-enzymatically glycated HSA with polyribonucleotide ligands

Yulia Gerasimova , Irina Erchenko and , Tatyana Godovikova

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Investigating the role of the SECIS RNA apical loop in selenoprotein synthesis

Artemy Beniaminov, Giorgio Cavigiolio, Elizabeth Theil, Christine Allmangand, Alain Krol

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Mapping the Global Structure of phi29 Packaging RNA Using Site-directed Spin Labelinga

Peter Z. Qin

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Modeling Pseudoknot Structures from Telomerase RNAs of Ciliates

Nikolai B. Ulyanov, Kinneret Shefer, Yehuda Tzfati

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Modeling structure and dynamics of RNA

Peter Varnai

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Molecular dynamics simulations of Hepatitis Delta Virus and Hairpin ribozymes: distinct strategies to use pockets of deep electrostatic potential minima

Jiri Sponer, Maryna V. Krasovska, Kamila Reblova, Jana Sefcikova, Maria M. Rhodes , Nils G. Walter

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Protein-RNA Recognition: Insight into U1A-RNA from Molecular Dynamics Simulations

Bethany L. Kormos, Anne M. Barangerand, David L. Beveridge

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Real-Time Control of the Energy Landscape by Force Directs the Folding of Single RNA Molecules

Pan TX Li, Carlos Bustamante, Ignacio Tinoco, Jr.

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RNA Biology

Phillip A. Sharp

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Selection and Characterization of NF-κB RNA Aptamers

Susan E. Wurster, L. James Maher, III

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Structural and functional studies of non-coding RNAs

Juli Feigon

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The structure and catalytic mechanism of the VS ribozyme

Timothy J. Wilson, Jonathan Ouellet, Jan Lipfert, Aileen McLeod, and, David M.J. Lilley

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Transcription and Translation Regulating Riboswitches. Structure of the Guanine Sensing Riboswitch in its Guanine-Free and -Bound Forms and Comparison with the SAM Riboswitch Type II

Otmar Ottink, Sumientra Rampersad, Marco Tessari, Frank Nelissen, Hans Heus and , Sybren Wijmenga

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2D DNA Arrays Used to Organize DNA-Based Devices, DNAzymes and Metallic Nanoparticles

Baoquan Ding, Alejandra Garibotti, Jiwen Zheng, Pamela Constantinou, Nadrian C. Seeman

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A DNA Based Single Nucleotide Polymorphism Detection Device

Banani Chakraborty, Ruojie Sha, Nadrian C. Seeman

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Addressable Molecular Node Assembly -- A Generic Platform of Nano-scale Functionalised Surfaces Based on a ?Digitally Addressable? Molecular Grid

John Tumpane, Peter Sandin, Ravindra Kumar, Vicki E.C. Powers, Piero Baglioni, Jean-Marie Lehn, Bo Albinsson, Per Lincoln, Tom Brown, L. Marcus Wilhelmsson, Bengt Nordén

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Assembling Nanocomponents One by One with DNA

Faisal Aldaye, Hanadi Sleiman

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DNA Computing: Science, Fun, and Practical Applications

Milan N. Stojanovic, Joanne Macdonald , Darko Stefanovic

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DNA Directed Self-assembly of Multi-component Nanoarchitectures

Hao Yan

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DNA-Based Computation of the Three-Colorability of a Graph

Gang Wu, Natasha Jonoska, Nadrian C. Seeman

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Multiple-Helix Bundles and Their Applications in DNA Nanotechnology

Tong Wang, Nadrian C. Seeman

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Non-Self-Complementary Four and Five Unit-Tangle DNA and DNA-RNA Hybrid Switchback Motifs

Tanashaya Ciengshin, Roberto Rossetti, Pamela E. Constantinou, Hao Yan, Zhiyong Shen, Nadrian C. Seeman

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Sculpting Responsive, Informational Nano-particles with RNA

Geary, C., Severcan, I., Verzemieks, E., Chworos, A., Jaeger, L.

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Templated Synthesis of Metal -DNA Crossover Points ? Unusual Stability and Dynamic Character

Hua Yang, Hanadi Sleiman,

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New Design Paradigms: Tetraplex Building Blocks for Structural DNA Nanotechnology

Harshad Ghodke, Ramya Krishnan, Vidhya Rangaraju, G. V. Pavan Kumar, Chandrabhas Narayana, Yamuna Krishnan

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Conformation Conversion and Stabilization of G-Quadruplex by Dinuclear RuII Complex [(bpy)2Ru(obip)Ru(bpy)2]4+

Shuo Shi, Caiping Tan, Jie Liu, Liangnian Ji

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Platinum metallointercalators to target G-quadruplex structures

Roxanne Kieltyka,, Nicolas Moitessier, Hanadi F. Sleiman

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(3+1) G-quadruplex Structures of the Human Telomere in K+ Solution

A. T. Phan, K. N. Luu, V. Kuryavyi, L. Lacroix, D. J. Patel

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A G-Quadruplex as a Light-Harvesting Antenna Within a Deoxyribozyme With Photolyase Activity

Dipankar Sen, Daniel Chinnapen, Rebecca Thorne, Gurpreet Sekhon

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A Novel G-quartets-containing Fold of Microsatellite d(GT)n Sequences

Dmitry N. Kaluzhny, Philip S. Bondarev, Anna K. Shchyolkina, Mikhail A. Livshits, Olga F. Borisova

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Human telomeric G-DNA ? a test example for force field adjustment

Eva Fadrna, Nada Spackova, Daniel Svozil, Jiri Sponerand, Jaroslav Koca

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Probing the Structural and Binding Interactions of Quadruplex DNAs with Hydroxyl radical footprinting

Sattanathan Paramasivan, Philip H Bolton

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Quadruplexes of Human Telomere DNA

Michaela Vorlickova, Jana Chladkova, Iva Kejnovska, Jaroslav Kypr

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Telomere-Like Motifs In A Genome Wide Regulatory Role

Anjali Verma, Kangkan Halder, Pooja Rawal, Praveen Kumar, Vinod Yadav, Rashi Kulshreshta, Swapan Kumar Das, Farhan Mohammad, Abhay Sharma, Shantanu Chowdhury

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The Formation Pathway of Tetrameric Oligonucleotide Structures

Caroline Bardin, Murielle Canalia, Jean-Louis Leroy

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The Influence of Different Local Thiophosphoryl Internucleotide Bonds on the d(GGTGGTTGTGGTGGT) Conformation

Marina A. Zaitseva, Dmitry N. Kaluzhny, Anna K. Shchyolkina, Olga F. Borisova, Galina E. Pozmogova

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The Unprecedented Structure of a G-quadruplex Formed in the Human c-kit Promoter

Anh Tuân Phan, Vitaly Kuryavyi, Sarah Burge, Stephen Neidle, Dinshaw J. Patel

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Unfolding Thermodynamics of G-quadruplexes

Chris Olsen, Luis A. Marky

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Electrostatic Potential Map of the Whole Genome DNA of T7 Bacteriophage. Electrostatic Properties and Function of its Promoter Regions

Alexander A. Osypov, Petr M. Beskaravainy, Anatoly A. Sorokin , Svetlana G. Kamzolova

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Structural Genomics of Plasmodium falciparum and Related Apicomplexan Organisms

Raymond Hui

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Structures of Plasmodium OMPDC Reveal Function of Unique Inserts

Raymond Hui

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Widespread DNA Structural Constraint in the Human Genome

Stephen C. J. Parker, Loren Hansen, Eric Bishop, David Landsman, NISC Comparative Sequencing Program, Elliott H. Marguliesand , Thomas D. Tullius

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Focussed structural genomics: Studies of molecules involved in vesicle tethering

Udo Heinemann, Daniel Kümmel, Andrew P. Turnbull, Michael Veit

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Synchrotron-Based Structural Proteomics of Vesicle Transport

Soichi Wakatsuki

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A Systems Structural Approach to Molecular Recognition in the Rab GTPase Family

Anna Delprato, Sudharshan Eathiraj, Xiaojing Pan, David G. Lambright

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Aquaporin Gating

Susanna Törnroth-Horsefield, K. Hedfalk, M. Karlsson, U. Johanson, Y. Wang, E. Tajkhorshid, R. Horsefield, M. Nyblom, A. Backmark, P. Kjellbom. R. Neutze

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Atomic Structure of Bacteriophage P22 Cell-wall Penetrating Tail Needle Gp26

Adam Olia, Anshul Bhardwaj, Sherwood Casjens, Gino Cingolani

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Conformational Dynamics of Acto-myosin Motor as Revealed by X-ray Protein Footprinting

J. K. Amisha Kamal, Sabrina Benchaar, Emil Reisler, Mark R. Chance

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Docking of Anti-TB Herbal Ligands Onto Homology Modeled Fatty Acid Synthase Protein (NP_217040) of Mycobacterium tuberculosis H37Rv

Ramesh K V, Kaushiki Wagle, Sudha Deshmukh

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Functional Forms of the Yeast Plasma Membrane H+-ATPase Carrying Multiple Alanine Substitutions of Cysteine Residues

Valery V. Petrov, Carolyn W. Slayman

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Intracellular Transport and Kinesin Superfamily Proteins: Structure Dynamics and Function

Nobutaka Hirokawa

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Molecular Mechanism of Molecules Translocation and Targeting Acidic Tissue In Vivo by pHLIP ? pH (Low) Insertion Peptide

Michael Segala, Oleg A. Andreev, Allison D. Dupuy, Michael Segala, Donald M. Engelman, Yana K. Reshetnyak

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Novel Therapy For Anthrax

Momochilo Vuyisich, Gnana Gnanakaran, Julie A. Lovchik, C. Rick Lyons, Kristin L. DeBord, Goutam Gupta

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Peculiarities of Succinate Transport in the Yeast Saccharomyces Cerevisiae

Valery V. Petrov

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Photoactivation of G Protein-coupled Receptor Rhodopsin

Elsa C. Y. Yan

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Structure and function of channels

Yoshinori Fujiyoshi

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Structures and mechanisms of the complexes of the respiratory chain and of sodium/ proton antiporters

Hartmut Michel

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Structural basis for the recognition of basic internalization signals within postsynaptic ion channels by AP-2μ

A. Vahedi-Faridi , V. Kukhtina, J. T. Kittler, W. Saenger, V. Haucke

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Artificial Ribonucleases

Valentin V. Vlassov, Marina A. Zenkova, V. N. Silnikov

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Human tRNA Synthetases in Translation and Angiogenesis

Xiang-Lei Yang

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Regulation of Virulence and Antibiotic Resistance in Pathogens

Chuan He

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Alternative Splicing and Intrinsic Disorder: Their Association and its Implications on Multicellular Complexity

Pedro Romero

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Binary DNA Tracts as Transcription Control Elements

G. Yagil

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Binary Probes for Selective Nucleic Acid Recognition

Dmitry M. Kolpashchikov

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Brownian Dynamics of Superhelical DNA

Steven P. Mielke, Craig J. Benham

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Conformational Dynamics and Mechanism of Interactions of Oligonucleotides with 3'-end of the East tRNAphe

Y.N. Vorobjev

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Conformational Equilibrium of RNA

Nilesh Banavali

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Cross-correlations of base-pair and dimer step parameters of DNA

Yana V. Shashel, Andrey G. Anishkin and , Michael Y. Tolstorukov

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Deciphering Antisense Regulation in Bacteria

V. I. Lukyanov, M. N. Tutukina, K. S. Shavkunov, I. S.Masulis, O. N. Ozoline

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Molecular Dynamics Based Physicochemical Model for Genome Analysis

Poonam Singhal, B. Jayaram, Surjit B. Dixit, D. L. Beveridge

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Structural Insights into Gene Regulation: The Role of Sequence-Specific DNA Structure in Protein-DNA Recognition

Remo Rohs, Zippora Shakked, Barry Honig

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Structure based identification of promoters in genomic DNA

Manju Bansal, Vikas Sharma and , R. Vetriselvi

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Tight turn DNA: A Novel Structure in Triplex

Lou-sing Kan

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Conformational Properties of Trinucleotide Repeats associated with Human Neurodegenerative Diseases

Michaela Vorlickova, Daniel Renciuk, Petr Fojtik, Michal Zemanek, Iva Kejnovska

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DNA Repeats, Unusual Structures and Genome Instability

Sergei M. Mirkin, Irina Voineagu

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Gene Transactivation by Z-DNA Binding Proteins

Jin-Ah Kwon, Ky Lowenhaupt, Alexander Rich

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Bridging the Gap Between the Small Molecule World and the RNA World

Nicholas V. Hud

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Components and Development of Genetic Code in Relation to Human Disease

Paul Schimmel

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Directed Mutations in Evolution: Linking Theory, Computation, and Experiments Using RNA Sequences as a Model

Danny Barash, Johannes Sikorski, Elizabeth Perry, Eviatar Nevo, Evgeny Nudler

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Duplex Nature of Ancient Genes

Idan Gabdank, Danny Barash, Edward N. Trifonov

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Early Molecular Evolution

Edward N. Trifonov

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Showing 101 to 200 of 235 items.  Page: 2