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Book of Abstracts: Albany 2005

category image Volume 22
No. 6
June 2005
Showing 101 to 185 of 185 items.  Page: 2

Nonequivalent Functions of the Individual Exosome Subunits and an Unexpected Critical Role of Exosome in the Reproductive Development in Arabidopsis

Sergei V. Reverdatto, Julia A. Chekanova, Nikolai P. Skiba, Jose M. Alonso, Vladimir B. Brukhin, Joseph R. Ecker, Ueli Grossniklaus, Dmitry A. Belostotsky

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Novel DNA Detectors Based on Resonance Energy-Transfer Between Ruthenium(II) and Osmium(II) Tris(2,2'-bipyridyl) Chromophores

Elena V. Bichenkova, Xuan Yu, Pranab Bhadra, Simon J. A. Pope, L. Walsh, Benjamin J. Coe, Stephen Faulkner, Kenneth T. Douglas

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Nucleic Acid Third Strand Binding Probes for Targets in the Human MDR-1 Gene

Anna Gabrielian, Olga Amosova, Jacques R. Fresco

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Nucleotide Flipping: Mechanisms and Specificity Determinants

Norbert O. Reich, R. August Estabrook, Ben Youngblood, Fa Kuen Shieh, Ben Hopkins, Stephanie Snyder, John Perona

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Oligonucleotide Analysis of E. coli Promoters Recognized by σ70-RNA Polymerase

Anatoly A. Sorokin, Alexander A. Osypov, Petr M. Beskaravainy, Svetlana G. Kamzolova

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Packing Defects as Drug Targets: Dodging the Side Effect

Ariel Fernandez

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PARP-1 Binding to Non-B-DNA Stimulates Auto- and Trans-poly(ADP-ribosyl)ation Reactions

Vladimir N. Potaman, Irina A. Lonskaya, Luda S. Shlyakhtenko, Elena A. Oussatcheva, Yuri L. Lyubchenko, Viatcheslav A. Soldatenkov

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Phthalocyanine-oligonucleotide Conjugates: Synthesis, Thermodynamics, and DNA Modification

Vladimir Koval, Alexander Chernonosov, Alexandra Kuznetsova, Nikita Kuznetsov, Dmitri Pyshnyi, Valentina Derkacheva, Eugene Lukyanets, Olga Fedorova

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Predicting Molecular Association

Ruben Abagyan, Jianghong An, Claudio Cavasotto, Juan Fernandez-Recio, Irina Kufareva, Maxim Totrov

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Prediction and Analysis of Complexes Formed Between the Anthrax Protective Antigen Heptameric ?Pre-Pore? and the Anthrax Lethal Factor and Between the Anthrax Lethal Factor and MAPKK-2 Peptide Substrate Models

Jingyan Zhao, Elysia Alvarez, Donald J. Nelson

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Preferential Counterion Binding to A-tract DNAs

Nancy C. Stellwagen, Qian Dong, Earle Stellwagen

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Principles of RNA Base Pairing: Structures and Energies of Cis and Trans-Watson-Crick/Sugar Edge Base Pairs Revealed by Quantum Chemical Calculations

Judit E. Sponer, Jerzy Leszczynski, Jiri Sponer

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Probing the Conformational Heterogeneity of the Aminofluorene-modified DNA by 19F NMR Spectroscopy

Srinivasa Rao Meneni, Bongsup P. Cho

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Probing the Interaction of Magnesium Ions with Double-Helical DNA by Proton Exchange and Nuclear Magnetic Resonance Spectroscopy

Alicia E. Every, Irina M. Russu

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Probing the Sequence-dependent Structure of DNA with the Hydroxyl Radical

Jason A. Greenbaum, Bo Pang, Steve Parker, Zhiping Weng, Thomas D. Tullius

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Progress Toward Accurate 3D Structure Prediction of Nucleic Acids

John SantaLucia, Jr.

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Protein Folding In Silico: A Computational Pathway from Secondary to Tertiary Structure

Pooja Narang, Kumkum Bhushan, Surojit Bose, B. Jayaram

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Protein Modules: The Closed Loop Prototype Database

E. Aharonovsky, Z. Frenkel, Y. Sobolevsky, E.N. Trifonov

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Protein-protein Interactions: What is the Preferred Way for Proteins to Interact?

Ozlem Keskin, Buyong Ma, Chung-Jung Tsai, Ruth Nussinov

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Protein-RNA Recognition: Yeast Ribosomal Protein L30e Suppressors and Kink-turn RNA Mutants

Susan A. White, James J. Schweppe, Cheryl Selah

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Pseudocomplementary PNAs as Artificial Sequence-specific DNA-bending Agents

Heiko Kuhn, Dmitry I. Cherny, Vadim V. Demidov, Maxim D. Frank-Kamenetskii

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Pseudohexagonal 2D DNA Crystals from Double Crossover Cohesion

Baoquan Ding, Ruojie Sha, Nadrian C. Seeman

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Quantum-chemical Semiempirical Study of Bounded Water and Counter Ions in Structure-vibrational Organization of Short Oligonucleotide Duplexes

Kabanov A.V., Komarov V.M., Teplukhin A.V., Yakushevich L.V.

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Recognition of Duplex DNA by Peptide Nucleic Acids (PNAs) with Mixed Base Composition via Helix Invasion

Irina V. Smolina, Vadim V. Demidov, Maxim D. Frank-Kamenetskii

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Recognition of Primer-template DNA by a Clamp Loader Protein

Maria Magdalena Coman, Manju M. Hingorani

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Recombination R-triplex: H-bonds Contribution to Stability as Revealed with Minor Base Substitutions for Adenine

Anna Shchyolkina, Dmitry Kaluzhny, Donna Arndt-Jovin, Thomas Jovin, Victor Zhurkin

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Recruiting Telomerase to Different Kinds of DNA Ends: A Role for Ku

Anne Stellwagen

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Regulation of Gene Expression with Programmable DNA Binding Oligomers

Peter B. Dervan

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Replication Initiator Assembly of the Adeno-Associated Virus

Fred Dyda

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Retroviral Matrix Domains Share Electrostatic Homology: Models for Membrane Binding Function Throughout the Viral Life Cycle

Paul S. Murray, Zhaohui Li, Jiyao Wang, Chris L. Tang, Barry Honig, Diana Murray

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Role of Translational Slippage of Long CAG Tracts in Neurological Disorders

Guy Rouleau, Andre Toulouse, Faith Au-Yeung, Claudia Gaspar, Julie Roussel, Patrick Dion

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Selection and Characterization of Novel Aptamers for Ion Channel Glutamate Receptors

Zhen Huang, Gang Li, Weimin Pei, Li Niu

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Selective Alkylation of DNA through a Recognition-Dependent Process

Steven E. Rokita

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Self-Mutilation by DNA: Site-specific Catalytic Depurination Within a Sickle Cell β-globin Gene Fragment

Olga A. Amosova, Richard Coulter, Jacques R. Fresco

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Sequence Specific Single Molecule Tracking of MicroRNA and Messenger RNA Using Quantum Dots

J. Jeffery Li, Kenneth S. Kosik, Kaiqin Lao, X. Sunney Xie

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Sequence-dependent Cyclization of Short DNA Sequences

Luke Czapla, Wilma K. Olson

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Sequence-Dependent Fluctuational Opening of Base Pairs in DNA

Andrew Krueger, Ekaterina Protozanova, Maxim D. Frank-Kamenetskii

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Simulation of RNA Structure and Dynamics

Peter Varnai

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Single-molecule Studies of the Compactosome: A Nucleosome-like Structure of Bacterial Chromosomes

Dror Sagi, Nir Friedman, Bernhard Schurr, Constantinos Vorgias, Amos B. Oppenheim, Joel Stavans

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Site-Resolved Dynamics and Energetics of a Ribosomal RNA

Congju Chen, Lihong Jiang, Irina M. Russu

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Small Interfering (si)RNA Degradation in Cell Extracts: Real-Time Monitoring by Ensemble and Single Molecule Fluorescence Resonance Energy Transfer (FRET)

Sarah A. Uhler, Dawen Cai, Meredith Lambert, Amy Predenkiewicz, Renata Rawlings, Nils G. Walter

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Small Molecule Mediated Assembly of Nucleic Acids: Implications for the RNA World Hypothesis

Swapan S. Jain, Nicholas V. Hud

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Spectral Density of DNA-ligand Complexes Fluctuation

V. B. Arakelyan, S. Yu. Babayan, V. I. Tairyan, A. V. Arakelyan, P. O. Vardevanyan

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Spectroscopic and Molecular Dynamics Evidence for a Sequential Mechanism for the DNA B_A Transition

Kelly M. Knee, Colin E. Aitken, Sergei Y. Ponomaryov, David L. Beveridge, Ishita Mukerji

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Stability of Intermediate State in Dimerization of Avian Sarcoma and Leukosis Viruses Genomic RNA

E. E. Minyat, A. D. Beniaminov, A. V. Samokhin, N. B. Ulyanov

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Statistical Assessment of Factors of Curvature Distribution in Prokaryotic Genomes

Limor Kozobay-Avraham, Sergey Hosid, Alexander Bolshoy

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Structural Aspects of Oligonucleotide-based Artificial Ribonucleases Possessing Phenazinium Anchor Group

M. M. Fabani, M. A. Zenkova, K.D. Douglas, V. V. Vlassov, E. V. Bichenkova

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Structural Basis for Poisoning of Topoisomerase 1 by the Antitumor Drug Gemcitabine

William H. Gmeiner, David E. Konerding, Mark Kelly, Nikolai Ulyanov, Thomas L. James

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Structural Features of A-T Oligomers Studied by X-ray Crystallography

L. Urpi, J. L. Campos, N. Valls, T. SanmartĂ­n, E. Alechaga, R. Baldini, D. De Luchi, M. Richter, A. Santaolalla, C. Gouyette, J. A. Subirana

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Structural Features of the HIV-1 Immunogenic Tip in Diverse Virus Strains

Alexander M. Andrianov

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Structural Organization of Bacterial Nucleoid

Konstantin Virnik, Michael Tolstorukov, Victor Zhurkin, Sankar Adhya

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Structural Principles of Small RNA Duplex Recognition

Lucy Malinina, Keqiong Ye, Dinshaw J. Patel

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Structure and Mechanism of RecBCD

Martin Singleton, Mark Dillingham, Martin Gaudier, Steve Kowalczykowski, Dale B. Wigley

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Structure and Stabilities of DNA Duplexes Containing 5-hydroxy Uracil Residues

Varatharasa Thiviyanathan, Anoma Somasunderam, David E. Volk, Tapas Hazra, Sankar Mitra, David G. Gorenstein

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Structure Calculations of Helical Membrane Proteins -- A Computational Approach

Ileana Stoica, Natalie Goto

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Structure of the Epsilon Encapsidation Signal of Human Hepatitis B Virus

Michael Petersen, Sara Flodell, Frederic Girard, Janusz Zdunek, Jurgen Schleucher, Karin Kidd-Ljunggren, Sybren Wijmenga

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Structure-Specificity Relationship in Protein-DNA Recognition

Akinori Sarai, Hidetoshi Kono

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Studies in Vision
1. Age-related macular degeneration. 2. Rhodopsin.

Koji Nakanishi

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Studies On Sequences Flanking TATA Boxes And Its Implications For Protein-DNA Interactions

Hana Faiger, Ilana Cohen, Tali E. Haran

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Study of Millimetric Electromagnetic Waves Action on Stability of DNA Solutions

Yuri S. Babayan, Alexan Sh. Markaryan, Sergei N. Hakobyan, Ruzan S. Kazaryan, Marine A. Parsadanyan, Kristine V. Pirumyan

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Supercoil Loop Domain Formation in Bacterial Chromosomes

N. Patrick Higgins, Shuang Deng, Richard Stein, Dipankar Manna

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Superhelical Path of Nucleosomal DNA is Controlled by Base-pair Slide

Michael Y. Tolstorukov, Andrew V. Colasanti, David McCandlish, Wilma K. Olson, Victor B. Zhurkin

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Surprising DNA Binding Activities of O6-Alkylguanine-DNA Alkyltransferase (AGT)

Michael G. Fried, Manana Melikishvili

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Synthesis of a ?taller? 2?,5?-linked Ribonucleic Acid: 2?-α-C-hydroxymethyl 2?,5?-linked RNA

Chang G. Peng, Rami N. Hannoush, Masad J. Damha

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Systematic Investigation of the Kinetics of Amyloid Formation for Immunoglobulin Light Chains

Richard McLaughlin, Laura A. Sikkink, Janelle De Stigter, Marina Ramirez-Alvarado

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Target-assembled Exciplex Detectors for Detecting DNA Sequences and Mismatches

E. V. Bichenkova, H. E. Savage, A. R. Sardarian, C. Rogert, A. Gbaj, L. Walsh, K. T. Douglas

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The Effect of a Single-Nucleoside Gap in DNA on Cyclization Kinetics

Truc T. Diep, Thomas D. Tullius

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The Effect of the Secondary and Tertiary Structure of d(TTAGGG)n Telomeric Oligonucleotides on their Binding with a Novel Recombinant Protein PGEk ? Deliver of DNA in Cells

Irina A. Besschetnova, Galina E. Pozmogova, Anna K. Shchyolkina, Olga F. Borisova

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The Genome in Three Dimensions: Structural Maps of Genomic DNA at Single-Nucleotide Resolution

Tom Tullius

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The Influence of Ionic Strength on the Binding of Hoechst 33258 with DNA

Poghos O. Vardevanyan, Ara P. Antonyan, Kristine V. Pirumyan, Zaruhi Boyajyan, Armen T. Karapetian

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The Metal Ligands of Cu/Zn Superoxide Dismutase Display Cooperative Roles in its Kinetic Stabilization: Implications for Amyotrophic Lateral Sclerosis

Sandra M. Lynch, Wilfredo Colon

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The Physics of Viral DNA Ejection

Rob Phillips

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The Role of Nucleoid-associated Proteins in the Organization and Compaction of Bacterial Chromatin

Remus Th. Dame

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The Stability of DNA Structure at Complexformation with cis- and trans-DDP

Tigran S. Haroutiunian, Poghos O. Vardevanyan

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The Tripeptide Recognizes AT Base Pairs of DNA

S. A. Streltsov, R. Sh. Beabealashvily, S. B. Grechishnikov

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Thymidine Phosphorylase from Escherichia coli: Tight-binding Inhibitors as Enzyme Active-site Titrants

Abdul Gbaj, Philip Reigan, Philip N. Edwards, Sally Freeman, Mohammed Jaffar, Kenneth T. Douglas

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Tracing Ancient Mini-genes in Modern mRNA Sequences

Idan Gabdank, Danny Barash, Edward N. Trifonov

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Translin Unfolds DNA Quadruplex Formed by Telomeric d(TTAGGG) Repeats

Dmitry Kaluzhny, Orly Laufman, Edward Timofeev, Olga Borisova, Haim Manor, Anna Shchyolkina

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tRNA Synthetases and Establishment of the Genetic Code

Paul Schimmel

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Two Dimensional Crystals of DNA DX-Parallelograms

Lisa B. Israel, Nadrian C. Seeman

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U1A-RNA Complex Formation: Insights from Molecular Dynamics Simulations

Bethany L. Kormos, David L. Beveridge, Anne M. Baranger

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Universal and Lineage-specific Trends in Protein Evolution

E. V. Koonin, I. K. Jordan, F. A. Kondrashov, I. A. Adzhubei, Y. I. Wolf, A. A. Kondrashov, S. R. Sunyaev

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Unstable Microsatellites and RNA-Mediated Disease

Rahul N. Kanadia, Yuan Yuan, Michael G. Poulos, Maurice S. Swanson

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Validation of DNA Sequences for DNA-Based Computing Using SYBR Green Fluorescence and Thermodynamic Calculations

Wendy Knapp Pogozelski, Matthew P. Bernard, Salvatore F. Priore, Anthony J. Macula

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Wafer-fixed Polyvinylnucleobases, Homo- and Co-polymers: Their Synthesis, Characterization and Applications in Nanotechnology

Walter-Vesely Seb. Meister

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Showing 101 to 185 of 185 items.  Page: 2