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Conversation 11: No. 2

category image Volume: Conversation 11
Issue Number 2
May 2000
ISBN 0-940030-81-0

Crystal Structure of an RNA Duplex [r(gugcaca)dC]2 with 3'-Dinucleoside Overhangs Forming a Superhelix

Shome Nath Mitra, Roopa Biswas, Ke Shi, Muttaiya Sundaralingam

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The Early Folding Intermediates of the TetrahymenaRibozyme are Kinetically Trapped

Corie Y. Ralston, Bianca Sclavi, Michael Brenowitz, Michael Sullivan, and Mark R. Chance

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Three-Dimensional RNA Structure-Based Drug Discovery

Thomas L. James, Kenneth E. Lind, Anton V. Filikov, Anwer Mujeeb

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Bridging the Prebiotic and RNA Worlds: Prebiotic RNA Synthesis on Clay

Gözen Ertem, K. Joseph Prabahar, P. C. Joshi and James P. Ferris

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Synthesis of Specifically Deuterated Nucleotides for NMR Studies on RNA

Jenny A.M.T.C Cromsigt, Jürgen Schleucher, Karin Kidd-Ljunggren, and Sybren S. Wijmenga

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An Earring for the Double Helix: Assembly of Topological Links Comprising Duplex DNA and a Circular Oligodeoxynucleotide

Heiko Kuhn, Vadim V. Demidov, and Maxim D. Frank-Kamenetskii

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Targeting of Pu.Py Duplexes by GA and GT Rich Oligonucleotides on Microchip and in Solution

E. Khomyakova, J. Liquier, T. Huynh-Dinh, V. Florentiev, A. Mirzabekov, and E. Taillandier

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NMR Structural Studies on a DNA Four-Way Junction: Stacking Preference and Localization of the Metal-ion Binding Site

Bernd N.M. van Buuren, Jürgen Schleucher, and Sybren S. Wijmenga

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Intramolecular i-Motif Structures of Telomeric DNA

Anh Tuân Phan, and Jean-Louis Leroy

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Two Dimensions and Two States in DNA Nanotechnology

Nadrian C. Seeman, Furong Liu, Chengde Mao, Xiaoping Yang, Lisa A. Wenzler, Ruojie Sha, Weiqiong Sun, Zhiyong Shen, Xiaojun Li, Jing Qi, Yuwen Zhang, Tsu-Ju Fu, Junghuei Chen, and Erik Winfree

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Algorithmic Self-Assembly of DNA: Theoretical Motivations and 2D Assembly Experiments

Erik Winfree

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Recent Highlights from Atomic Force Microscopy of DNA

Helen G. Hansma, Lía I. Pietrasanta, Roxana Golan, John C. Sitko, Mario B. Viani, George T. Paloczi, Bettye L. Smith, Douglas Thrower, and Paul K. Hansma

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Probing DNA Conductivity with Photoinduced Electron Transfer and Scanning Tunneling Microscopy

Eimer Tuite, Per Lincoln, Johan Olofsson, Hans-Christian Becker, Björn Önfelt, Donats Erts, and Bengt Nordén

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DNA-Mediated Electron Transfer: A Sensitive Probe of DNA-Protein Interactions

Scott R. Rajski, and Jacqueline K. Barton

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Long-Range Hole Transport in DNA

Stephan Wessely, and Bernd Giese

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M-DNA: pH Stability, Nuclease Resistance and Signal Transmission

Palok Aich, Heinz-Bernhard Kraatz, and Jeremy S. Lee

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NMR Studies of DNA Structures Containing Sheared Purine?Purine and Purine?Pyrimidine Base Pairs

Shan-Ho Chou

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DNA Bending and Sugar Switching

Shantaram Kamath, Mukti H. Sarma, Victor B. Zhurkin, Christopher J. Turner, and Ramaswamy H. Sarma

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Nucleic Acid Structure Investigated by UV Resonance Raman Spectroscopy: Protonation Effects and A-Tract Structure

Liliana Sokolov, Kristi Wojtuszewski, Eliana Tsukroff, and Ishita Mukerji

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Drug Self-Assembly on DNA: Sequence Effects with trans-bis-(4-N-methylpyridiniumyl)diphenyl Porphyrin and Hoechst 33258

Matthew A. Ismail, P. Mark Rodger, and Alison Rodger

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Stabilization of Double Stranded Homologous Poly(dA)·Poly(dT) by Taxol

Gerlinde Bischoff, Ulrich Gromann, Sabine Lindau, Eckhard Birch-Hirschfeld , Robert Bischoff, Christian Bohley, Walter-Vesély Meister, and Siegfried Hoffmann

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DNA Sequence Recognition of a Cross-Linked Polyamide: CD Studies, Footprinting and Effects on the Activity of DNA Gyrase

Günther Burckhardt, Ingo Förtsch, Hannelore Simon, Eckhard Birch-Hirschfeld, Leonhard Kittler, Holger Schütz, Sanjay K. Sharma, J. William Lown, and Christoph Zimmer

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Pf1 Filamentous Phage as an Alignment Tool for Generating Local and Global Structural Information in Nucleic Acids

Mark R. Hansen, Paul Hanson, and Arthur Pardi

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Anomalous Migration of Short Sequences of DNA: Comparison of Theory and Experiment

Udayan Mohanty, Tim Searls, and Larry W. McLaughlin

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The Sensitivity of the B-Z Transition of DNA to Multivalent Cations in High and Low Concentrations: A Unified Electrostatic Interpretation

J.-Ph. Demaret, and M. Guéron

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Aromatic Base Stacking in DNA: From ab initio Calculations to Molecular Dynamics Simulations

Jirí Sponer, Imre Berger, Nad?a Spacková, Jerzy Leszczynski, and Pavel Hobza

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