19th-banner-rev.gif

Albany 2001

category image Biomolecular
Stereodynamics
SUNY at Albany
June 19-23, 2001
Showing 101 to 200 of 223 items.  Page: 2

Interaction of DNA Molecules in the Presence of DNA Topoisomerase I inhibitor Topotecan

S.A. Streltsov, A.L. Mikheikin and Yu.D. Nechipurenko

View Abstract

Interaction of E. coli DNA Topoisomerase I with nucleotides

Camille J. Roche and Yuk-Ching Tse-Dinh#

View Abstract

Interaction of EtBr and NMM-porphyrin with the parallel-stranded DNA formed by 3'-d(GTGTGTGTGG)-pO(CH2CH2O)3p-d(GGTGTGTGTG)-3' oligonucleotide

Olga F. Borisova and Anna K. Shchyolkina.

View Abstract

Interaction of p53 to its natural promoters (waf1, and mdm-2) in the human genomic DNA; Implications of DNA structure and the oligomerization of p53 on its DNA binding specificity

P.Balagurumoorthy (1), Luda Shlyakhtenko (1), Kenneth M. Egan (1, 2), Stuart M. Lindsay (2) and Rodney E. Harrington (1)

View Abstract

Internal Dynamics in a Site-Specific 15N-Labeled DNA Triple Helix

Lihong Jiang (1), and Irina M. Russu (2),

View Abstract

Interstrand Cross-Linking Caused by Local Stabilization of the Double Helix

Alexander S. Fridman, Samvel G. Haroutiunian and Dmitri Y. Lando

View Abstract

Investigation of Stacking and Hydrogen Bonding in DNA using NMR.

Elke Duchardt, Christian Richter, Christian von der Heyden, Christian Griesinger, and Harald Schwalbe

View Abstract

Investigation of the energetics of C-HáááO hydrogen bonds in the DNA i-motif via the equilibrium between alternative intercalation topologies

Jean-Louis Leroy, Karim Snoussi and Maurice Gu?ron

View Abstract

Ions: the Underwear of DNA

Juan A. Subirana

View Abstract

Kinetics and Specificity of Cisplatin Binding to Genomic DNA in Peripheral Blood Mononuclear Cells.

Bradley A. Hubbard (1), Kirk Tacka, James C. Dabrowiak, Jerry Goodisman (2), Mehmet K. Aktas, Peter D. Sadowitz, Ronald L. Dubowy and Abdul-Kader Souid (1)

View Abstract

Map of Z-DNA in Human Chromosome 22

Christopher Chámp, Tracy Camp and P. Shing Ho

View Abstract

Mechanism of Hybridization of Antisense Oligonucleotides with tRNA

V. Petyuk, R. Serikov, V. Koval, V. Vlassov, M. Zenkova, O. Fedorova

View Abstract

Mechanisms in Phototransduction: Crystal Structure of RGS9 and Its Complexes with Ga and Phosphodiesterase

Michele A. Kercher (1,2), Kevin C. Slep (1,4), Wei He (3), Christopher W. Cowan (3,4), Theodore G. Wensel (3) & Paul B. Sigler (1,2)

View Abstract

Mechanisms of DNA Unlinking and Chromosome Segregation

Nicholas. R. Cozzarelli, Alexander Alexandrov, Nancy Crisona, Carlos Bustamante, Zev Bryant, Christine Hardy, Victor Holmes, Brian Peter, Lisa Postow, Michael Stone, Alexander Vologodskii

View Abstract

MercuryY Electrodes as Sensitive Tools in the Studies of DNA Structure, Interactions and Damage

Miroslav Fojta, Ludek Havran, Frantisek Jelen, Rene Kizek and Emil Palecek

View Abstract

Methyl groups as probes of structure and dynamics in peptides and proteins

David Chatfield,

View Abstract

Modelling Large-Scale Structural Dynamics of DNA Macromolecule

S.N. Volkov

View Abstract

Modulation and Control of GTPase activity of heterotrimeric G(alpha) subunits

J. Chen (1), Y. Wang (2), D. Fancy (1), X. Du (2) and S.R. Sprang (1,2)

View Abstract

Molecular Basis of RNA Tetraloop Stability

Joanna Sarzynska, Lennart Nilsson, Tadeusz Kulinski

View Abstract

Molecular dynamics simulation reveals sequence-intrinsic and protein-induced geometrical features of the OL1 DNA operator

David C. Kombo(1), Kevin J. McConnell(1), Matthew A. Young(1,2) & David L. Beveridge(1)

View Abstract

Molecular Dynamics Simulation In Solvent of Two Dimers of Phage 434 Cl Repressor Protein DNA Binding Domain in Complex with 434 Operators (OR1) And (OR2) within a 50 Base Pair DNA Sequence

Lester F. Harris, Michael R. Sullivan and Pamela D. Popken-Harris

View Abstract

Molecular Dynamics Simulations and Metal Ion Binding Properties of Wild-Type and Mutational Variants of Functional Fragments of Silver Hake Parvalbumin (Isoform B)"

Kelly M. Elkins, Kamau Fahie, Rebecca Pitts, Sandra P. Revett and Donald J. Nelson

View Abstract

Molecular dynamics simulations of nucleic acids: Issues with nanosecond length simulation, salt, solvation, energetics and treatment of the electrostatics.

Thomas E. Cheatham, III,

View Abstract

Molecular Dynamics Studies of a Poly dA 30-mer: Temperature Salt Effects and the Premetling Transition.

Yongxing Liu and D. L. Beveridge

View Abstract

Molecular dynamics studies of RNA loop stabilization by U-turn motif

T.Kulinski, K.Kulinska, J.Sarzynska

View Abstract

Molecular Dynamics Study of 3? Phosphoramidate Modified DNA Quadruplex in Solution: Conformation and Hydration

R. P. Ojha

View Abstract

Morphological Aspects of the SOS Response

S. Levin-Zaidman, D. Frenkiel-Krispin, E. Shimoni, S. G. Wolf and A. Minsky

View Abstract

Most of the 98.5% non-coding genomic DNA in mammals are retroposon-derived: genomic desert or repertoire?

J?rgen Brosius

View Abstract

New Approaches in Studying RNA-polymerase?Promoter Recognition Code

T.R. Dzhelyadin(1), A.A. Sorokin(1), V.S. Sivozhelezov(1), N.N. Ivanova(1), R.V. Polozov(2), S.G. Kamzolova(1)

View Abstract

New NMR Approaches for DNA Structure Determination

Michael A. Kennedy

View Abstract

Nmr Studies of Structures And Mechanisms in Biological Systems

K. Wüthrich

View Abstract

NMR Studies on Newt (Notophthalmus Viridescens) acidic Fibroblast Growth Factor: Structure, Dynamics, Folding and Interactions

Chin Yu

View Abstract

NMR Study on Binding of Alkali Cations to G-quadruplex formed by d(G4T4G3)

Martin Crnugelj (1), Nicholas V. Hud (2) and Janez Plavec (1)

View Abstract

Normal Mode Analysis of DNA in Terms of Base Pair Step Parameters

Atsushi Matsumoto, Wilma K Olson

View Abstract

Nucleosome Positioning Sequences

H. Widlund, C. Hui, T. Simonsson and M. Kubista

View Abstract

Paper-Clip Type Triple Helix Formation by 5'-d-(TC)3Ta(CT)3Cb(AG)3 (a, b = 0 - 4): as a Function of Loop Size And with/without the Pseudoisocytosine Base in the Hoogsteen Strand

Lou-sing Kan (1), Tsung-Mei Chin (2), Shwu-Bin Lin (3), Szu-Yin Lee (2), Mu-Li Chang (2), Alice Yu-Yu Cheng (1, 2), Fu-Chao Chang (1, 2) Laura Pasternack (4), and Dee-Hua Huang (4)

View Abstract

pH-Induced Helix-Coil Transition of EtBr Ð DNA Complexes

Ara P. Antonyan, Pogos O. Vardevanyan and Armen T. Karapetian(1).

View Abstract

Phylogenetic analysis based on Hsp90 heat-shock protein sequences

Olga K. Mamayeva (1) and Victor V. Emelyanov (2)

View Abstract

Probing the Binding Sites of the Actin/Cofilin Complex By Synchrotron Protein Footprinting

Jing-Qu Guan, Mark R. Chance and Steven C. Almo

View Abstract

Probing the Relation Between Force Ð Lifetime Ð and Chemistry in Single Molecular Bonds

Evan Evans

View Abstract

Processing of pre-transfer RNA by ribonuclease P : design of synthetic inhibitors of a ribozyme.

Yoshiaki Hori (2), Elena V. Bichenkova (1), Amanda N. Wilton (1), Mohamed N. El-Attug (1), , Seyed Sadat-Ebrahimm (1), Terumichi Tanaka (2), Yo Kikuchi (2), Michihiro Araki (3), Yukio Sugiura (3) and Kenneth T. Douglas (1)

View Abstract

Protein - DNA Minor Groove Recognition

M.Ye. Tolstorukov, R.L. Jernigan, and V.B. Zhurkin

View Abstract

Protein structure and folding, a new start

Igor N. Berezovsky and Edward N. Trifonov

View Abstract

Protein Structure Data Mining via the Kappa-Tau Framework. N- Glycosylation Sties in Human and Mammalian Proteins.

Dikeos Mario Soumpasis, Ramneek Gupta & Soeren Brunak

View Abstract

Proton Exchange and Base Opening in Two DNA Triple Helices

Lihong Jiang (1), and Irina M. Russu (2),

View Abstract

Relationship between Interphase Chromosome Structure and Nuclear Geometry

Joseph Ostashevsky

View Abstract

Research strategies for design and development of NSAIDs: clue to balance potency and toxicity of acetanilide compounds.

Asok K. Pal, Sawan Sen, Sreya Ghosh, Asim K. Bera, Suparna Bhattacharya, Sibani Chakraborty and Asok Banerjee

View Abstract

Reversibility of cadmium-induced apoptosis is associated with increased level of telomerase activity in tobacco TBY-2 cells.

Miloslava Fojtova, Jana Fulneckova, Jir? Fajkus and Ales Kovarik

View Abstract

Ribosome structure and function by single-particle cryo-EM

Rishi Matadeen, Tillmann Pape, Brent Gowen, Elena Orlova, Bruno Klaholz, Ardan Patwardhan, and Marin van Heel

View Abstract

Robbust calculation of conformational free energy in molecular modeling

Yury N. Vorobjev, Jan Hermans

View Abstract

Selective binding of S- and R- ofloxacin to B-form DNA

Kyounghwa Jung,Eun-Jung Lee, Jeong-Ah Yeo and Seog K. Kim

View Abstract

Sequence and Salt Effects on Methylene Blue Binding to DNA with Alternating GC and AT Base Sequences

Remo Rohs and Heinz Sklenar

View Abstract

Sequence-specificity of p50 protein binding to ss and ds oligodeoxinucleotides investigated by means of biological microchip techniques.

O.A. Zasedateleva (1), A.S. Krylov (1), D.V. Prokopenko (1), M.A. Skabkin (2), L.P. Ovchinnikov (2), A.D. Mirzabekov (1)

View Abstract

Sexual Dimorphism in Diverse Metazoans is Regulated by a Novel Class of Intertwined Zinc Fingers: NMR and Crystallographic Studies of the Doublesex DM Domain

Lingyang Zhu, Narendra Narayana, Uma Narendra, Biaoru Li & Michael A. Weiss.

View Abstract

Single DNA Molecule Melting By Mechanical Force

I. Rouzina. M. C. Williams, J. R. Wenner, V. A. Bloomfield

View Abstract

Slipped-strand DNA in trinucleotide repeat sequences may be stabilized by inter-loop interactions.

V.N.Potaman (1), E.A.Oussatcheva (1), L.S.Shlyakhtenko (2), Y.L.Lyubchenko (2), and R.R.Sinden (1).

View Abstract

Solution Conformation of the Tachykinin Peptide Eledoisin

R. Christy Rani Grace1, Indu Chandrashekar2 and Sudha M. Cowsik2

View Abstract

Solution structure of a conserved RNA tetraloop: the recognition site of Saccharomyces cerevisiae RNase III

Haihong Wu, Samuel E. Butcher, Sundeep Kang and Juli Feigon

View Abstract

Stabilization and Crystallization of the Response Regulator NarL in its Phosphorylated State and in Complex with DNA

Gail Katsir(1), Maria K-Grzeskowiak(2), Ann E. Maris(1), Mary L. Kopka(2), Robert P. Gunsalus(3), Mike Jarvis(3), Imke Schroder(3), and Richard E. Dickerson(1,2).

View Abstract

Stabilization of DNA duplex and triplex structures by intercalating agents: Construction of 3D phase diagrams

Matjaz Polak and Nicholas V. Hud

View Abstract

Stacked Watson-Crick Base Pairs

Shan-Ho Chou

View Abstract

Statistical mechanics of proteins: perspective from analytical theory and simulations.

Eugene Shakhnovich

View Abstract

Strong and Weak Interaction of Ethidium Bromide with ds-DNA

Armen T.Karapetian, Zaruhi R.Boyagyan, Grigor A.Manukian, Ara P.Antonian(1), , Pogos O.Vardevanian(1) and Olga F.Borisova(2)

View Abstract

Structural and computational studies of a class II MHC complex with a nonconforming peptide

Christian S. Parry and Lawrence J. Stern,

View Abstract

Structural Basis for Recognition of Intron Branch Site RNA by SF1

Ingrid Luyten, Zhihong Liu, Matthew Bottomley, Katia Zanier, Remco Sprangers, Ana Messias, Angela Krämer+ and Michael Sattler

View Abstract

Structural Basis of T Cell Activation by Bacterial Superantigens

Yi Li(1), Eric Sundberg(1), Hongmin Li(2), Patrick M. Schlievert(3), Klaus Karjalainen(4), and Roy A. Mariuzza(1)

View Abstract

Structural genomics of cholesterol biosynthesis: mevalonate 5-diphosphate decarboxylase and isopentenyl diphosphate isomerase

Jeffrey B. Bonanno(3,2,), Carme Edo(3), Narayanan Eswar(3), Ursula Pieper(3), Michael J. Romanowski(3), Sue Ellen Gerchman(1), Helen Kycia(1), F. William Studier(1), Andrej Sali(3), and Stephen K. Burley(3,2,)

View Abstract

Structural genomics of RNA

Jennifer A. Doudna

View Abstract

Structural investigation of flexible motifs of DNA .

Fedoseyeva V.B.(1), Alexandrov A.A., Korobko V.G.(2), Nekrasova O.V.(2), Klinov D.V.(2)

View Abstract

Structural studies of prokaryotic RNA polymerases

Elizabeth A. Campbell, Shoko Masuda, Katsuhiko Murakami, Natacha Opalka, and Seth A. Darst

View Abstract

Structural Transitions of Poly(rA)*Poly(rU) Induced by Ni(2+) Ions at Elevated Temperatures Studied by Vibrational Circular Dichroism (VCD) and IR Spectroscopy

V. Andrushchenko (1), J.H. van de Sande (2), Yu. Blagoi (3) and H.Wieser (1)

View Abstract

Structure an dynamics of the water shell in the (CG)n duplexes in a view of stabilization of 2Õ-O-methylated RNA.

K.Kulinska, T.Kulinski, A.Lyubartsev, A.Laaksonen and R.W.Adamiak

View Abstract

Structure Analysis of Serum Amyloid A Isoforms by Limited Proteolysis and Mass Spectrometry

Limin Wang, Daniel Moriarty, and Wilfredo Col?n

View Abstract

Structure and dynamics of lateral loop regions of DNA guanine quadruplex d(G4T4G4)2 studied by advanced molecular modelling methods

Eva Fadrna (1), Nada Spackova (2), Jiri Sponer (2) and Jaroslav Koca (1)

View Abstract

Structure and Dynamics of the Sm Binding Site From Human U4 snRNA.

William H. Gmeiner (1),Cui Wei (1), Jian-xin Guo (2), Luis Commoli (3), Nikolai B. Ulyanov (3), Thomas L. James (3), Ana Maria Soto (4), Luis A. Marky (4)

View Abstract

Structure and dynamics of the water shell in the (CG)n duplexes in a view of stabilization of 2'-O-methylated RNA.

K.Kuli_ska, T.Kuli_ski, A.Lyubartsev, A.Laaksonen and R.W.Adamiak

View Abstract

Structure and Function in the Large Ribosomal Subunit

J. Hansen (1), D. Klein (1), M. Schmeing (1), J. Ippolito (1), P. Nissen (1) , N. Ban (1)à , P.B. Moore (1,2) and T.A. Steitz (1,2,3).

View Abstract

Structure And Function Of A Protein Moonlighting As Phosphoglucose Isomerase/Autocrine Motility Factor/Neuroleukin

Chwan-Deng Hsiao (1), Yuh-Ju Sun (1), Chia-Cheng Chou (1), and Menghsiao Meng (2)

View Abstract

Structure and RNA Recognition In The RRM and dsRBD Protein Families

Gabriele Varani, Paul Cole, Nicolas Leulliot, Andres Ramos and Luca Varani

View Abstract

Structure and Thermodynamics of Hairpins containing 2Õ,5Õ-Linked RNA Loops

Rami N. Hannoush and Masad J. Damha

View Abstract

Structure of a Flp recombinase Ð DNA complex

Yu Chen(1), Umadevi Narendra(1), Lisa Iype(2), Michael Cox(2), and Phoebe Rice(1)

View Abstract

Structure, Dynamics and Thermodynamics of the Mbp1-DNA Interaction

Andrew N. Lane (1), Pauline B. McIntosh (1,2), Thomas A. Frenkiel (1), Ian Taylor (1,3), Teresa W-M. Fan (4) and Stephen J. Smerdon (1)

View Abstract

Structure-Based Design Of A Bi-Specific Receptor Mimic That Inhibits T Cell Responses to a Superantigen

Elizabeth Hong-Geller(1), Nancy M. Lehnert(1), David L. Allen(1), Beth L. Allen(1), Patrick Shiflett(1), Michael Chen(2), Bruce E. Lehnert(1), & Goutam Gupta(1)

View Abstract

Structures and Characteristic of Telomeric DNA in Cells by Atomic Force Microscopy

En-Hua Cao (1), Ai Chen (1), Xian-Yan Zhang (1), Jing-Fen Qin (1), Da-Ge Liu (2), Chen Wang (2), and Chun-li Bai (2)

View Abstract

Structures of complexes in the bacterial phosphotransferase pathway (PTS) using new methodology for the rapid determination of macromolecular complexes by NMR

G. Marius Clore

View Abstract

Studies on the mechanism of migration of DNA through polyacrylamide gels

Tali E. Haran, Ilana Cohen, and Udayan Mohanty#

View Abstract

Superfamily of RecA-like Proteins Active in DNA Recombination and Replication

Xiong Yu, Margaret VanLoock, Shixin Yang, Edward H. Egelman

View Abstract

The Behavior of the DNA Topoisomerase I Inhibitor Topotecan in Aqueous Solution

S.A. Streltsov(1), S.L. Grokhovsky(1,2), I.A. Kudelina(3), V.A. Oleinikov(3) and A.L. Zhuze(1)

View Abstract

The Determinants of the Specific Recognition of an Adenosine in an RNA-Protein Complex

Jerome C. Shiels, Jacob B. Tuite, Scott J Nolan, Anne Baranger

View Abstract

The Effects of Nucleobase Metalation on the Electronic Structure of DNA Bases, Their Acidity, Basicity, Tautomeric Equilibria, and Proton Transfer Processes. Comparison of Intrinsic Gas Phase Trends With Solution and Solid State Data.

J. Sponer(1), J. E. Sponer(1), J. Leszczynski(2) and B. Lippert(3)

View Abstract

The Free Energy and Structural Pathways of Base Flipping in DNA

Nilesh K Banavali and Alexander D. MacKerell, Jr.

View Abstract

The Information Content of Single Molecule Experiments

Anita Goel

View Abstract

The Making of a Mutation: "Tricking" T7 DNA Polymerase into Accepting a Mismatched dATP Opposite a Carcinogen Damaged Guanine in the Active Site

Rebecca Perlow and Suse Broyde

View Abstract

The mediation of the A-B DNA helix transition by guanine tracts

Ho-Leung Ng & Richard E. Dickerson

View Abstract

The National Stable Isotope Resource at Los Alamos. An NIH Supported Resource.

Ryszard Michalczyk, Jurgen Schmidt, Rodolfo A. Martinez, Louis A. "Pete" Silks III, Clifford J. Unkefer

View Abstract

The NMR Structure of the Reverse Transcriptase Binding Region of the Pregenomic RNA of the Hepatitis B Virus

Sara Flodell (1), Jenny Cromsigt (1), Hans Ippel (1), Jurgen Schleucher (1), Karin Kidd-Ljunggren (2) and Sybren Wijmenga (1)

View Abstract

The Polymerases of Replication and Transcription

T.A. Steitz (1,2,3), M.C. Franklin (1), B.L. Zhou (1), J. Pata (1), Y. Shamoo (1), J. Wang (1), G.M.T. Cheetham (1) and D. Jeruzalmi (1).

View Abstract

The quest for new forms of promoter determinants. Relationship of promoter nucleotide sequences to their electrostatic potential distribution

A.A. Sorokin(1), T.R. Dzhelyadin(1), N.N. Ivanova(1), R.V. Polozov(2), S.G. Kamzolova(1)

View Abstract

The Role of DNA Flexibility and Curvature in Protein Binding

D. M. Crothers, D. Nathan, M. Roychoudhury

View Abstract

The Role of the Minor Groove at Central Non-Contacted Bases in Operator Recognition by 434 Repressor

Steven A. Mauro, David R. Pawlowski, Gerald B. Koudelka

View Abstract
Showing 101 to 200 of 223 items.  Page: 2