Issue June 2004

category image Volume 21
No. 6 (p. 725-854)
June 2004
ISSN 0739-110

Protein Decoy Sets for Evaluating Energy Functions (p. 725-736)

Dimitri Gilis

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Trypsin Activity Reduced by an Autocatalytically Produced Nonapeptide (p. 737-744)

B. Syed Ibrahim, N. Shamaladevi, Vasantha Pattabhi

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Solvent Interactions and Protein Dynamics in Spin-labeled T4 Lysozyme (p. 745-760)

Ileana Stoica

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Molecular Dynamics Simulations of β-turn Forming Tetra- and Hexapeptides (p. 761-770)

Attila Borics, Richard F. Murphy, Sándor Lovas

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Thermophilicity of Wild Type and Mutant Cold Shock Proteins by Molecular Dynamics Simulation (p. 771-780)

Stefano Garofoli, Mattia Falconi, Alessandro Desideri

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Structural Characterization of Vivapain-2 and Vivapain-3, Cysteine Proteases from Plasmodium vivax: Comparative Protein Modeling and Docking Studies (p. 781-790)

Prashant V. Desai, Mitchell A. Avery

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A Free Energy Based Computational Pathway from Chemical Templates to Lead Compounds: A Case Study of COX-2 Inhibitors (p. 791-804)

N. Latha, Tarun Jain, Pankaj Sharma, B. Jayaram

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Algorithmic Generation of Freely Jointed Hard Sphere Chains and Properties of their Inertial Tensors (p. 805-812)

Weizhen Wang, Y. Bruce Yu

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Aqueous and Micelle-bound Structural Characterization of the Epidermal Growth Factor Receptor Juxtamembrane Domain Containing Basolateral Sorting Motifs (p. 813-826)

Kiattawee Choowongkomon, Michael E. Hobert, Cheng He Cathleen R. Carlin, Frank D. Sonnichsen

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A 3D Graphical Representation of RNA Secondary Structures (p. 827-832)

Bo Liao, Tian-ming Wang

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Base Pairing at the Stem-loop Junction in the SL1 Kissing Complex of HIV-1 RNA: A Thermodynamic Study Probed by Molecular Dynamics Simulation (p. 833-840)

Samia Aci, Jean Ramstein, Daniel Genest

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Effect of LNA Modifications on Small Molecule Binding to Nucleic Acids (p. 841-850)

Violeta Marin, Henrik F. Hansen, Troels Koch, Bruce A. Armitage

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